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- Fundamental aspects
-
1. Inflammation and tissue homeostasis
- Prof. Herman Waldmann
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2. Introduction to the immune system
- Prof. Herman Waldmann
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3. Hematopoiesis: the making of an immune system
- Prof. Paul J. Fairchild
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4. Inflammation: purposes, mechanisms and development
- Prof. Pietro Ghezzi
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5. Phagocytosis
- Dr. Eileen Uribe-Querol
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6. Regulated cell death mechanisms and their crosstalk with the immune system 1
- Dr. Luis Alberto Baena-Lopez
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7. Regulated cell death mechanisms and their crosstalk with the immune system 2
- Dr. Luis Alberto Baena-Lopez
- Innate immunity
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11. Cells of the innate immune system
- Prof. Kevin Maloy
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12. Microbial recognition and the immune response
- Dr. Dana Philpott
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13. Toll-like receptor signalling during infection and inflammation
- Prof. Luke O'Neill
- Intercellular mediators
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14. Chemokines
- Dr. James E. Pease
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15. Cytokines
- Prof. Iain McInnes
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16. IL-1 family cytokines as the canonical DAMPs of the immune system
- Prof. Seamus Martin
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17. Glycans at the frontiers of inflammation, autoimmunity and cancer
- Prof. Salomé S. Pinho
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18. Glycoimmunology
- Prof. Paula Videira
- Adaptive immunity B cells
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21. Antigen recognition in the immune system
- Prof. Herman Waldmann
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22. B cell biology
- Prof. Richard Cornall
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23. Antibody structure and function: antibody structure
- Dr. Mike Clark
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24. Antibody structure and function: antibody function
- Dr. Mike Clark
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25. Antibody genes and diversity
- Dr. Mike Clark
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26. In vivo antibody discovery and hybridoma technology
- Prof. Dr. Katja Hanack
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27. Antibody engineering: beginnings to bispecifics and beyond
- Dr. Ian Wilkinson
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29. The immunobiology of Fc receptors
- Prof. Mark Cragg
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30. Immunoreceptors
- Prof. Anton van der Merwe
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31. Affinity, avidity and kinetics in immune recognition
- Prof. Anton van der Merwe
- Adaptive immunity T cells
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32. The thymus and T cell development: a primer
- Prof. Georg Holländer
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33. Lineage decisions in the thymus: T cell lineage commitment
- Prof. Bruno Silva-Santos
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34. Lineage decisions in the thymus: αβ and γδ T cell lineages
- Prof. Bruno Silva-Santos
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35. CD4 T cell subsets
- Dr. Brigitta Stockinger
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36. Cytotoxic T lymphocytes
- Prof. Gillian M. Griffiths
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37. Gamma delta T-cells
- Prof. Bruno Silva-Santos
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38. Tfh and Tfr cells
- Prof. Luis Graca
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39. Tissue resident memory T cells (TRM)
- Dr. Marc Veldhoen
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40. Mathematical modeling in immunology
- Prof. Ruy M. Ribeiro
- The importance of the MHC in immunity
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41. The MHC and MHC molecules 1
- Prof. Jim Kaufman
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42. The MHC and MHC molecules 2
- Prof. Jim Kaufman
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43. Natural killer cells
- Dr. Philippa Kennedy
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44. Human NK cells
- Prof. Lorenzo Moretta
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46. NK cells in viral immunity
- Prof. Lewis Lanier
- Lymphocyte activation
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47. Signal transduction by leukocyte receptors
- Dr. Omer Dushek
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48. Immunological memory 1
- Prof. David Gray
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49. Immunological memory 2
- Prof. David Gray
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50. Studying immune responses “one cell at a time”
- Dr. Mir-Farzin Mashreghi
- Major cellular partners in immunity
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51. The mononuclear phagocyte system - tissue resident macrophages: distribution and functions
- Prof. Emeritus Siamon Gordon
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52. The mononuclear phagocyte system: tissue resident macrophages - activation and regulation
- Prof. Emeritus Siamon Gordon
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53. Dendritic cells: professional antigen presenting cells
- Prof. Paul J. Fairchild
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54. Mucosal immunology
- Prof. Daniel Mucida
- Immunological tolerance and regulation
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55. Self-tolerance
- Prof. Herman Waldmann
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56. Tolerance and autoimmunity
- Prof. Emerita Anne Cooke
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57. The balance between intestinal immune homeostasis and inflammation
- Prof. Dr. Janneke Samsom
- Translational immunology - immune deficiency
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58. Primary immunodeficiency disorders
- Dr. Smita Y. Patel
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59. Changes in innate and adaptive immunity during human ageing 1
- Dr. Roel De Maeyer
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60. Changes in innate and adaptive immunity during human ageing 2
- Dr. Roel De Maeyer
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61. The aging immune system
- Prof. Ana Caetano
- Translational immunology - protection against pathogenic microbes
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62. Immune responses to viruses
- Prof. Paul Klenerman
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63. HIV and the immune system
- Prof. Quentin Sattentau
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64. COVID-19: the anti-viral immune response
- Prof. Danny Altmann
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65. Bacterial immune evasion
- Prof. Christoph Tang
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66. The immunology underlying tuberculosis
- Prof. Thomas R. Hawn
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67. Innate immunity to fungi
- Prof. Gordon D. Brown
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68. Parasite immunity: introduction and Plasmodium
- Dr. Catarina Gadelha
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69. Parasite immunity: Leishmania and Schistosoma
- Dr. Catarina Gadelha
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70. Vaccination
- Dr. Anita Milicic
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71. The history of vaccines 1
- Prof. Emeritus Anthony R. Rees
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72. The history of vaccines 2
- Prof. Emeritus Anthony R. Rees
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73. The history of vaccines 3
- Prof. Emeritus Anthony R. Rees
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74. The science of vaccine adjuvants
- Dr. Derek O'Hagan
- Translational immunology - hypersensitivity, autoimmune disease and their management
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75. Hypersensitivity diseases: type 1 hypersensitivity
- Prof. Herman Waldmann
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76. Innate lymphoid cells in allergy
- Prof. Emeritus Shigeo Koyasu
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77. Hypersensitivity diseases: type II-IV hypersensitivity
- Prof. Sara Marshall
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78. Immune memory underlying lifelong peanut allergy
- Dr. Kelly Bruton
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79. Memory B cells in allergy: B cell activation and response
- Dr. Kelly Bruton
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80. Memory B cells in allergy: ontogeny, phenotype and plasticity
- Dr. Kelly Bruton
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81. B cells at the crossroads of autoimmune diseases
- Dr. Xiang Lin
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82. Interleukin-17: from clone to clinic
- Prof. Leonie Taams
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83. Autoimmunity and type 1 diabetes
- Prof. Emerita Anne Cooke
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84. What is new in type 1 diabetes?
- Prof. Åke Lernmark
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85. Antibodies to control or prevent type 1 diabetes
- Dr. Robert Hilbrands
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86. Monoclonal antibodies in haemato-oncology
- Prof. Mark Cragg
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87. Therapeutic antibodies
- Dr. Geoffrey Hale
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88. Endothelial cells: regulators of autoimmune-neuroinflammation
- Dr. Laure Garnier
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89. Neuroimmunometabolism
- Prof. Ana Domingos
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90. The immunology of multiple sclerosis
- Dr. Joanne Jones
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91. Immunology of the peripheral nervous system: the inflammatory neuropathies
- Dr. Simon Rinaldi
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92. Ocular immunology: an overview of immune mechanisms operating in the eye
- Dr. Eleftherios Agorogiannis
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93. Understanding myasthenia gravis and advances in its management
- Prof. Henry J. Kaminski
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94. The immunology underlying rheumatic diseases
- Dr. Hussein Al-Mossawi
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96. Complement and lupus
- Prof. Marina Botto
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97. Immune mechanisms in liver diseases
- Prof. Paul Klenerman
- Translational immunology - transplantation immunology
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98. Principles of transplantation: overview of the immune response
- Prof. Emerita Kathryn Wood
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99. Factors influencing outcomes in clinical transplantation 1
- Prof. Emerita Kathryn Wood
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100. Factors influencing outcomes in clinical transplantation 2
- Prof. Emerita Kathryn Wood
- Translational immunology - cancer immunology
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101. Cancer immunology
- Prof. Tim Elliott
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102. Cancer immunotherapy
- Prof. Tim Elliott
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103. Myeloid-derived suppressor cells in cancer
- Prof. Dmitry Gabrilovich
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104. IL-2 in the immunotherapy of autoimmunity and cancer
- Prof. Thomas Malek
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105. Latest advances in the development of CAR & TCR T-cell treatments for solid tumours
- Dr. Else Marit Inderberg
Printable Handouts
Navigable Slide Index
- Introduction
- Very complex interactions of many players
- Technology development
- Is the Earth or the Sun the center of the Universe?
- What model?
- Observation: set-point viral load
- Viral load at steady state
- A simple model
- The equation of the simple model
- Disrupting equilibrium
- Apheresis experiment
- Extremely fast viral turnover
- T cell dynamics
- Telomeres over time
- Expression of Ki67
- Deuterated glucose
- Assessing T cell dynamics
- Modeling T cell dynamics
- Model equations
- Results: uninfected vs. infected
- Results: untreated vs. treated
- Correlation proliferation vs. %Ki67+
- Interpreting the results
- Explaining conflicting results
- D-glucose labeling revisited
- T cell dynamics
- T cell Receptor Excision Circles (TREC)
- Behavior of TREC with age and HIV infection
- TREC dynamics
- A simple model of TREC dynamics
- What do TREC dynamics tell us?
- In summary
- Further reading
- Acknowledgements
Topics Covered
- The role of modelling in immunology
- A first simple model: viral clearance
- The equation of the simple model
- Apheresis experiment
- Models of T-cell dynamics: proliferation
- Telomeres
- Expression of Ki67
- Deuterated glucose
- T cell Receptor Excision Circles (TREC) dynamics
- Models explain contradictory observations
- Models of T-cell dynamics: thymic production
- Models help design experiments
Links
Series:
- The Immune System - Key Concepts and Questions
- Periodic Reports: Advances in Clinical Interventions and Research Platforms
Categories:
Therapeutic Areas:
Talk Citation
Ribeiro, R.M. (2022, October 16). Mathematical modeling in immunology [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved February 5, 2025, from https://doi.org/10.69645/ISSQ8828.Export Citation (RIS)
Publication History
Financial Disclosures
- Prof. Ruy M. Ribeiro has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.
A selection of talks on Immunology
Transcript
Please wait while the transcript is being prepared...
0:00
Welcome all.
My name is Ruy Ribeiro.
Today, I'd like to talk about
the impact of mathematics
in immunology,
which is a subject that has
a longer history than
one might think.
0:12
Perhaps the first
question is why even talk
about mathematics and modeling
in the context of immunology?
While the immune response
is a very complex
process with many
interacting players,
different types of cells,
myriads of molecules,
cytokines, chemokines,
interleukins.
The processes that these
cells and molecules
mediate are very complex,
redundant and dynamic.
We know from the
history of science that
mathematics is an
appropriate framework to
deal with this
complexity in helping to
explore relationships
and mechanisms.
0:46
That's even more the
case due to the recent
technology and
development explosion
that led to a massive influx in
our capacity to gather data,
exposing even more of the
complexity of the immune response.
However, to transform data into
information and knowledge,
we need a way to
analyze the big data.
Again, mathematics is the
appropriate language for that.
1:12
Of course, mathematics has
an ancient history
of doing just that.
Transforming data
into knowledge.
Is the Earth or the sun at
the center of the universe?
As depicted here,
a representation of the
Ptolemaic Universe.
On the right,
a representation of
the Copernican system.
Well, we know the
answer is neither.
But the point is that
even with hundreds of
years of observations
from many places,
so a lot of data,
the model of the
solar system was
wrong for over 1200 years.
Yet, Aristarchus of Samos,
in the third century
Before the Common Era,
using basic trigonometry
in the figure here,
had already inferred in
texts that are mostly lost,
that the sun is at the center
and the Earth moves around it,
and even spins on itself.
This shows that mathematics
has a long history
of translating data
into knowledge.