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Printable Handouts
Navigable Slide Index
- Introduction
- Who is Axel Kornerup Hansen?
- The SPF system & the reproducibility crisis
- Rodent studies have low reproducibility and translationability
- We buy other stuff when we buy a mouse
- We buy other stuff when we buy a mouse: Associated microbiota
- The specific pathogen free housing reduces diversity and pathogen exposure
- Differences between mice and men
- SPF animals are not virus-free
- Do microbiome differences mean anything?
- Key parameters correlate with microbiota composition
- Some colonies lack key bacteria
- Oligosaccharides
- Bifidobacterium spp.
- Akkermansia muciniphila: Introduction
- Akkermansia muciniphila
- The gut-brain axis
- Gut microbiota in schizophrenia
- Time of life is an issue for immunity
- The loss of old friends hypothesis
- Gut colonization and their impact on immune responses
- C-sectioned mice cluster with their foster mother and have a weaker regulatory immunity
- What can we do: Solution 1
- Solution 1: Ensure a more complex microbiota in your mice (1)
- Solution 1: Ensure a more complex microbiota in your mice (2)
- Transfer of atopic dermatitis sensitivity
- Transfer of IBD protection
- Phages in the bacteria also make a difference
- Host-specific microbiota and its effect on the immune system
- Immune response of human v/s mice microbiota transplanted mice
- Transplanted microbiota is quite stable over generations
- What can we do: Solution 2
- Solution 2: Incorporate microbiota differences to increase power
- What can we do: Solution 3
- Solution 3: Ensure that your mice have experienced some pathogens
- Being dirty without being dangerous
- Impact of preimmunization on the DIO mouse
- What can we do: Solution 4
- Solution 4: Traditional health monitoring
- It could be equally important to declare the presence of some bacteria
- What can we do: Solution 5
- Solution 5: Feralization
- Housing with more air and space
- Take-home messages
- We cannot disregard the impact of microbiota on animal models
- Outcomes of experimentation on mice
- Acknowledgements
- Finanical disclosures
Topics Covered
- Reproducibility and translationability of rodent studies
- Mice pathogen diversity
- Differences between microbiota of mice and men
- Key parameters of microbiota composition
- Prebiotic benefits of oligosaccharides
- The gut-brain axis
- Gut colonization and immune responses
Links
Series:
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Therapeutic Areas:
External Links
Talk Citation
Hansen, A.K. (2026, June 30). Improving and humanizing animal models by microbiomic techniques [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved July 1, 2026, from https://doi.org/10.69645/NCRR5402.Export Citation (RIS)
Publication History
- Published on June 30, 2026
Financial Disclosures
- Prof. Axel Kornerup Hansen has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.
A selection of talks on Physiology & Anatomy
Transcript
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0:00
My name is Axel Kornerup Hansen,
and I will introduce
you to how important
the microbiome is
for the modeling of
human diseases in animals,
especially in mice.
0:12
I worked with animal models and
bacteria for almost 40 years.
Today, I'm a professor in
laboratory animal science
and welfare at the vet school
of the University of Copenhagen.
Through this work, I have
had several collaborations
with commercial enterprises,
which, of course, can give
some conflicts of interest.
0:31
Laboratory rodents
are normally produced
as specific pathogen-free, SPF.
That means that they are housed
and produced under
ultra-hygienic conditions,
rendering them
free of pathogens.
But unfortunately,
also have a range of
microorganisms which may be
essential for the modeling
of human diseases.
0:56
A main issue with rodent
disease models has
over the last decades been that
they very frequently are
difficult to reproduce.
That means, to get
the same results
in new but similar studies.
Also, often rodent studies
translate poorly into humans.
That means much
preclinical research fails
when data from
rodents are used to
set up clinical
studies in humans.
This is known as a
reproducibility crisis.
1:27
One explanation for this
lack of reproducibility
may be that we fail to consider
that we buy other stuff
when we buy a mouse.
1:39
When the laboratory mouse is
delivered from a
commercial breeder,
you will, in addition
to the mouse,
with its approximately
20000 number of genes,
also get maybe 1000
different microbes,
which in numbers may be 10^14,
and which contain maybe two
million microbial genes.
That means the microbes have
a much higher capacity than
the mammal host itself,
and much of what
the mouse can do
is actually done
by the microbes.
The bacteriome consists of
more or less the same
bacterial phyla as in humans.
Deferribacteres accepted because
this is normally part of
a starting culture when starting
up new rodent colonies.
However, the abundances may
differ essentially
between mice and humans.
In addition to the bacteriome,
we also have the virome,
the mycobiome, and
the parasitome.
Many of these are
commensals or symbionts.
But within all groups,
there are also pathogens.
Although these are
unwanted because
disease is unwanted in
our laboratory animals,
pathogens may also
be important for
the induction of certain
rodent models for
human diseases.