Evolutionary perspectives on human microbiota: a journey through zoological and bacteriological realms

Published on October 29, 2026   28 min

A selection of talks on Microbiology

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0:00
Hello. My name is Gabriel Trueba, and I will be speaking to you about the evolutionary perspectives of the human microbiota.
0:11
The outline of the presentation will be: the microbiota description, the current view about microbiota, bacterial genetics and evolution, microbiota stability, selective forces in microbiota, selective forces in animal hosts, and conclusions.
0:29
So what is the human microbiota? First of all, I would like to differentiate the two terms microbiota and microbiome. Microbiota is just the group of microorganisms that we have in the intestine, whereas microbiome is the group of organisms, the genes, the functions, the metabolism, etc. So it's a much more complex term. During the presentation, I will be talking about these two terms almost interchangeably. The largest contributor to human microbiota, the intestinal microbiota, is bacteria. We have around 1000 bacterial species and a different number of strains belonging to a given species. So there's a very great diversity in the intestine.
1:22
I'm going to talk about the prevailing view of the human microbiome, and that's what you find in the current literature about the human intestinal microbiome. So most of the papers that you see emphasize on bacterial species and not the strains. I'm going to show you that's a problem with the current view of the microbiota. This approach ignores horizontal gene transfer. Sometimes you can read that some bacteria are good, some bacteria are bad. For instance, Prevotella copri is thought to be a good bacterium. E. coli is thought to be maybe not so good bacteria. So in the next slide you'll see that this view is not correct. It should be more complex the way that we approach the human intestinal microbiome. The other view that I think is not correct is that the microbiota is mutualistic, which means that it benefits both bacteria and human hosts more or less at the same level. This view sometimes goes as far as to say that the microbiota is a human organ. Also, many people mentioned that the microbiota is something stable. So if you have a microbiota, that microbiota is going to stay with you for the rest of your life as long as you keep eating the same food or have the same way of life. I would like to talk a little bit about

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Evolutionary perspectives on human microbiota: a journey through zoological and bacteriological realms

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