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Printable Handouts
Navigable Slide Index
- Introduction
- Outline
- Human microbiota
- The prevailing view of the human microbiome
- Bacterial genetics and evolution
- Bacterial genome: Core and accessory genomes
- Ratio of core to accessory genome
- Accessory genome
- E. coli: Same species, different strains, different functions
- Phocaeicola plebeius
- Stability
- Intestinal species stable but strain replaced overtime
- Bacterial species and their stability behaviours
- Signatures of natural selection in the human microbiota
- Natural selection measured by convergent evolution
- Selective pressure on gut microbiota
- Signatures of natural selection in the animal hosts
- Animal dependency on microbiota
- Cellulose degradation by termite microbiota
- Extreme dependency on microbiota (mutualism)
- Gastrointestinal tract evolution
- Birds: Evolution hoatzin stomach
- Evolution for housing and extracting nutrients from bacteria in animals
- Changes in the human diet as brain size expanded over time
- Human brain
- Human higher dependency on animal fat
- Energy dependency
- Defense against pathogens
- Conclusions
- Financial disclosures
Topics Covered
- Microbiota description
- Current view about microbiota
- Bacterial genetics and evolution
- Microbiota stability
- Selective forces in microbiota
- Selective forces in animal hosts
Links
Categories:
External Links
Talk Citation
Trueba, G. (2026, October 29). Evolutionary perspectives on human microbiota: a journey through zoological and bacteriological realms [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved October 29, 2026, from https://doi.org/10.69645/ISDM1256.Export Citation (RIS)
Publication History
- Published on October 29, 2026
Financial Disclosures
- There are no commercial/financial matters to disclose.
Evolutionary perspectives on human microbiota: a journey through zoological and bacteriological realms
Published on October 29, 2026
28 min
A selection of talks on Microbiology
Transcript
Please wait while the transcript is being prepared...
0:00
Hello. My name is
Gabriel Trueba,
and I will be
speaking to you about
the evolutionary perspectives
of the human microbiota.
0:11
The outline of the
presentation will be:
the microbiota description,
the current view
about microbiota,
bacterial genetics and
evolution, microbiota stability,
selective forces in microbiota,
selective forces in animal
hosts, and conclusions.
0:29
So what is the human microbiota?
First of all, I would
like to differentiate
the two terms microbiota
and microbiome.
Microbiota is just the group
of microorganisms that we
have in the intestine,
whereas microbiome is
the group of organisms,
the genes, the functions,
the metabolism, etc.
So it's a much
more complex term.
During the presentation,
I will be talking about
these two terms almost
interchangeably.
The largest contributor
to human microbiota,
the intestinal
microbiota, is bacteria.
We have around 1000
bacterial species
and a different
number of strains
belonging to a given species.
So there's a very great
diversity in the intestine.
1:22
I'm going to talk about
the prevailing view
of the human microbiome,
and that's what you find
in the current literature
about the human
intestinal microbiome.
So most of the
papers that you see
emphasize on bacterial
species and not the strains.
I'm going to show
you that's a problem
with the current view
of the microbiota.
This approach ignores
horizontal gene transfer.
Sometimes you can read that
some bacteria are good,
some bacteria are bad.
For instance, Prevotella copri
is thought to be
a good bacterium.
E. coli is thought to be
maybe not so good bacteria.
So in the next slide
you'll see that
this view is not correct.
It should be more
complex the way that
we approach the human
intestinal microbiome.
The other view that I
think is not correct
is that the microbiota
is mutualistic,
which means that it
benefits both bacteria and
human hosts more or
less at the same level.
This view sometimes goes
as far as to say that the
microbiota is a human organ.
Also, many people mentioned that
the microbiota is
something stable.
So if you have a microbiota,
that microbiota is
going to stay with you
for the rest of your life
as long as you keep
eating the same food
or have the same way of life.
I would like to talk
a little bit about