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1. The basal transcription machinery for RNA polymerase II
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2. The Myc transcription factor network
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3. Role of polycomb proteins in gene transcription, stem cell and human diseases
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4. Heterochromatin, epigenetics and gene expression
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5. Histone dynamics, heritability and variants
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6. Hox gene regulation in vertebrate hindbrain development
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7. Enhancer malfunction in cancer
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8. Maintaining the silenced state of master regulatory genes during development
- Prof. Robert Kingston
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9. Genomic insights into gene regulation by cohesin
- Prof. Dale Dorsett
- Archived Lectures *These may not cover the latest advances in the field
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11. DNA methylation
- Prof. Steve Jacobsen
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12. Accessing and using ENCODE data
- Prof. Peggy Farnham
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13. Visualization of transcription factor interactions in living cells
- Prof. Tom Kerppola
-
14. The beta-globin locus
- Dr. Ann Dean
Printable Handouts
Navigable Slide Index
- Introduction
- The importance of protein interactions
- Cell stimulation with different stimuli
- Different cell responding to the same stimuli
- Protein interactions roles in transcription regulation
- Why visualize molecular processes in living cells?
- Protein interactions control cell functions
- Principle of BiFC
- Pathway for BiFC formation
- BiFC enables visualization of protein interactions
- The influence of single amino acid substitutions
- BiFC analysis of full length Fos-Jun heterodimers
- Regulation of Jun-ATF2 heterodimer localization
- Interactions among bZIP family proteins
- Bimolecular fluorescence complementation
- Visualization of molecular processes in living cells
- BiFC analysis of Rel family proteins interactions
- Fos and Jun form cross family complexes
- Fos/Jun interactions with p50/p65
- Interactions between bZIP and Rel family proteins
- Visualization of molecular processes in living cells
- Myc and Mad family proteins compete for Max
- Myc and Mad recruit Max
- Visualization of multiple complexes
- Mad3 and Mad4 can re-localize Max homodimers
- Quantitation of relative efficiencies of dimerization
- Relative efficiencies of dimerization (1)
- Relative efficiencies of dimerization (2)
- Mad3CN and Mad4CN are expressed equally
- Dimerization selectivity
- Visualization of molecular processes in living cells
- Ubiquitin family peptide conjugation
- Ubiquitin-mediated fluorescence complementation
- Ubiquitinated Jun is exported from the nucleus
- UbFC depends on the association of Jun/ubiquitin
- YNUb expression does not mis-localize Jun
- SUMO conjugated Jun is localized to foci
- The fragment fusions do not influence conjugation
- Ubiquitinated Jun is localized to lysosomes
- Subcellular fraction of ubiquitinated Jun
- Co-localization of Jun-Ub and E3 ligase Itch
- Itch recognition motif
- JunY170F ubiquitination
- Jun is stabilized by Y170F
- Model for lysosomal localization
- Visualization of ubiquitin family peptide conjugation
- Visualization of molecular interactions
- Aknowledgment
Topics Covered
- Transcription regulatory proteins
- Combinatorial control of gene expression
- Visualization of transcription factor interactions and modifications in living cells
- New methods development
- Bimolecular fluorescence complementation (BiFC) assays
- Ubiquitin mediated fluorescence complementation (UbFC) assays
Links
Series:
Categories:
Talk Citation
Kerppola, T. (2014, April 2). Visualization of transcription factor interactions in living cells [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved December 26, 2024, from https://doi.org/10.69645/JSCF4401.Export Citation (RIS)
Publication History
Financial Disclosures
- Prof. Tom Kerppola has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.
Visualization of transcription factor interactions in living cells
A selection of talks on Biochemistry
Transcript
Please wait while the transcript is being prepared...
0:00
Hello, my name is Tom Kerppola.
I am a Howard Hughes Medical
Institute investigator
and professor of
biological chemistry
at the University of
Michigan Medical School.
In my presentation I will discuss
transcription factor interactions.
I will especially focus on new
methods developed in my laboratory
for the visualization of protein
interactions in living cells.
Since I will not have time
to discuss all details
in my presentation, I have
included a link to our website.
And I invite you to
go to the website
to look for additional information.
0:36
I will start my discussion
by introducing the importance
of studies of protein
interactions for understanding
of biological
regulatory specificity.
All cells are constantly responding
to stimuli from their environments.
The specificity of these
responses is determined by protein
interactions at many
different levels.
Extracellular stimuli induce
interactions between proteins
at the membrane, including
receptors and other proteins.
These interactions produce signals that
induce additional interactions among intercellular
signal transduction proteins.
The signal transduction network
induces transcription factor
interactions, both off
DNA and upon assembly
at specific regulatory elements.
These interactions in
turn produce changes
in the expression of
specific target genes.
Thus, cells respond
to their environment
by altering protein interactions.