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Printable Handouts
Navigable Slide Index
- Introduction
- Central dogma of molecular biology
- Why we study noncoding RNAs
- Transcriptional activity in chromosomes 21 and 22
- RNA interference pathways
- Small RNAs can also silence foreign genes
- One function for RNAi...
- Non-specific silencing via antiviral pathway
- Discovery of microRNA
- Where in the world is let-7?
- MicroRNA in mammalian systems
- Extensive class of small RNAs
- miR-1 is conserved across multi-cellular organisms
- Where the microRNAs hang out
- Translational inhibition
- siRNAs guide cleavage not translational repression
- miRNAs exhibit temporal and spatial expression
- Developmental aspects for RNAi and miRNAs
- In-depth investigation of miR-196
- RNAi and the vertebrate Hox loci
- Target site conservation
- miR-196 downregulation of GFP UTR HoxB8
- Mapping the endogenous cleavage site of HoxB8
- Where are microRNAs expressed
- Ways to see microRNA expression in situ
- What is the limit for specificity?
- Expression pattern of let-7 genes
- What about the microRNAs within the Hox loci?
- Hairpin siRNAs
- Hairpins developed by other groups
- Lentiviral construct for siRNAs
- 14-fold CD8 knockdown by lentivirus siRNAs
- Functional silencing of genes in transgenic mice
- Development of tailored shRNA libraries
- Other types of small RNA silencing activity
- Small RNAs derived from centromeric repeats
- siRNA targets DNA?
- Multiple classes of RNAse III molecules
- Creating a conditional allele of Dicer in cells
- Developmental analysis of Dicer in mouse limbs
- Large fraction of phenotypic cells at passage 3
- Small RNAs are a growing class of molecules
- Acknowledgements
Topics Covered
- Introduction to noncoding RNAs
- Functional biology of RNA interference pathways
- Structural overview of microRNAs
- Modes of action of small noncoding RNAs
- An example of a microRNA target
- Where are small RNAs expressed?
- Harnessing the RNA interference pathway for genetic analysis
- Genetic ablation of the catalytic engine for small RNA production in the mouse
Talk Citation
McManus, M. (2016, October 13). Specific functional roles in mammals [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved December 27, 2024, from https://doi.org/10.69645/ZDCO1562.Export Citation (RIS)
Publication History
Financial Disclosures
- Dr. Michael McManus has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.
Specific functional roles in mammals
A selection of talks on Cell Biology
Transcript
Please wait while the transcript is being prepared...
0:04
The freshmen view of gene expression is often presented like this,
a relatively simple diagram of a cell showing
the flow of gene expression from the nucleus into the cytoplasm.
We've learned from our basic biology classes,
that gene expression begins with the transcription of DNA to make RNA,
which can then be spliced and polyadenylated,
exported from the nucleus,
and then this genetic information is encoded in the RNA is then translated into protein,
the building blocks of a cell.
And looking as such a simple diagram,
things almost make sense.
But underneath this seemingly simple facade,
this cell really buzzes with biochemical complexity.
Each genome in every cell or plant of animal contains many thousands of genes.
And left to its own accord,
the cell might express every gene in the genome at once.
However, no cell could really function with such a behavior.
Cells have to regulate gene expression,
allowing only the appropriate subset to be expressed in each particular cell type.
Although the genomes of many organisms have been sequenced,
scientists are still struggling with how a cell makes
the decision of which genes to be expressed and which gene to silence.
In one time, many scientists assumed that
the chief regulatory components of the cell were composed of proteins.
However, new data are emerging suggesting that
RNA may play an important regulatory role in
gene expression and a critical role in
the development of cell types creating complex lifeforms.
1:30
These new data cause us to study the regions of the genome once considered junk DNA,
the regions of the genome which lie within and around protein encoding genes.
When one adds up the total parts of the genome,
that encode for proteins,
it's clear that the protein encoding portions,
make up only a relatively minor percentage of most complex eukaryotes.
Take for example, in humans it's thought that there's less
than one and a half maybe two percent of the genetic material,
which is translated into protein.
The rest of this information is considered non-coding,
and it is within this dark matter which
scientists are discovering a lot of interesting biology.
To be clear, just because the genome contains a major fraction of non-coding RNA,