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Printable Handouts
Navigable Slide Index
- Introduction
- Overview
- Implications of microbes in disease - Koch’s postulates
- Implications of microbes in disease - Fredericks and Relman
- Implications of microbes in disease - problems with invoking postulates of causation
- Microbe hunting
- Mechanisms of microbial pathogenesis (1)
- Mechanisms of microbial pathogenesis (2)
- Mechanisms of microbial pathogenesis (3)
- Fever during pregnancy increases autism risk
- Three strikes hypothesis
- Molecular methods for pathogen detection
- Challenges in investigating the pathogenesis of infectious diseases using molecular tools
- Considerations in use of molecular assays
- Power of multiplex assays
- Molecular Beacon PCR
- Taqman PCR
- The clinician in pathogen discovery
- Electron microscopy
- The pathologist in pathogen discovery
- Role of classical microbiology in pathogen discovery
- Emergence of HIV/AIDS
- Blood borne transmission of HIV/AIDS
- Two years from recognition of disease to identification of causative agent
- Three years
- Evolution of high throughput sequencing
- A selection of >1200 viruses discovered/characterized at CII 2009-2018
- Dandenong virus
- Response to LuJo outbreak
- Time course of LuJo outbreak
- Phylogenetic analysis of LuJo virus
- Discovery of Piscine reovirus (1)
- Discovery of Piscine reovirus (2)
- Discovery of Piscine reovirus (3)
- Discovery of Tilapia lake virus (1)
- Discovery of Tilapia lake virus (2)
- Unbiased high throughput sequencing
- Bioinformatic analysis
- VirCapSeq-VERT
- Enrichment with VirCapSeq-VERT
- Analysis workflow for VirCapSeq-VERT
- Pathogen discovery misfires
- Pathogen discovery retractions
- A New York subway study finds many mystery microbes
- Estimating the zoonotic pool: virodiversity of Pteropus giganteus, Bangladesh
- Consensus (family/genus) PCR
- Consensus (family/genus) PCR: results
- Estimating viral diversity in a population
- MERS-CoV survey of Saudi dromedary camels
- Historical infection high throughput serology using peptide microarrays
- Predicting the future
- Future perspectives
Topics Covered
- Introduction to microbial discovery, surveillance and diagnosis
- Koch’s Postulates and proof of causation
- Mechanisms of microbial pathogenesis
- Gene:environment interactions
- Molecular and serological assays for differential diagnosis of infectious diseases
- High throughput sequencing
- Future perspectives
Links
Series:
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Therapeutic Areas:
Talk Citation
Lipkin, W.I. (2019, September 26). Novel approaches to diagnosis of viral infections [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved December 21, 2024, from https://doi.org/10.69645/ANVF9587.Export Citation (RIS)
Publication History
Financial Disclosures
- Prof. W. Ian Lipkin confirms that there are no commercial/financial relationships to disclose.
A selection of talks on Microbiology
Transcript
Please wait while the transcript is being prepared...
0:00
This is Ian Lipkin; I'm the John Snow Professor
at Columbia University in the City of New York,
and I will be talking today to you about approaches to the diagnosis of viral infections.
0:14
In today's lecture, I'm going to go over the following items.
First, are the methods we have for implicating
not only all viruses but also all microbes in disease.
We'll talk a bit about mechanisms by which bacteria,
viruses, fungi, and microbes, in general, cause disease;
the methods we use for diagnosis and discovery;
the potential viral pool-
an estimate based on some empirical data that we've obtained in field studies;
and some thoughts about future perspectives.
Our focus will be on viruses but to some extent,
we have to talk about other microbes, as well.
0:50
The earliest efforts of which we have
record in investigating the implication microbes and disease,
dates from Koch's work presented and published in
1890 in the 10th International Congress of Medicine in Berlin.
His postulate was as follows,
that the microbe had to be present in every case of disease,
it had to be specific for that disease, that is to say,
it could not be implicated in any other disease;
it had to be isolated,
grown in culture, and shown to induce disease upon inoculation into an experimental host.
There frequently is a fourth postulate,
which was probably a part of Koch's original work
but suggested that you had to re-isolate the microbe
from that experimental host where you've demonstrated the capacity to reproduce disease.
These are what are known as famous Koch's postulates,
frequently called Koch's postulates, plural,
but there are problems with them particularly in
the molecular era and we'll go into those shortly.