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Printable Handouts
Navigable Slide Index
- Introduction
- Outline of talk
- Introducing the protein intrinsic disorder concept
- Classical protein structure-function paradigm
- Protein structure-function paradigm: the big bang
- Recognition of intrinsic disorder by example
- Apo-form of human alpha-fetoprotein
- Prothymosin alpha: funny protein
- Prothymosin alpha: nothing to look at
- Role of bioinformatics
- Intrinsically disordered proteins: brief history (1)
- Intrinsically disordered proteins: brief history (2)
- Intrinsically disordered proteins: brief history (3)
- New concept in protein science
- Fate of a polypeptide chain
- Protein non-folding problem
- Different depth of disorder in a whole protein
- Different levels of disorder in a protein molecule
- Protein sequence and intrinsic disorder
- Protein non-folding: why?
- Amino acid determinants of protein foldability
- Prediction of protein disorder status
- Databases for prediction
- Natural abundance of intrinsic disorder
- Abundance of intrinsically disordered proteins
- Why are IDPs abundant in different proteomes?
- Protein disorder and function
- Elucidating functional repertoire of IDPs
- Functional anthology of disordered proteins (1)
- Functional anthology of disordered proteins (2)
- Protein structure/function relationships
- Intrinsic disorder in PPI networks
- Flexible nets
- Can hub proteins and their partners be rigid?
- Intrinsic disorder and PPI networks
- HMGA1 interactome
- 14-3-3 many-to-one binding scenario
- p53 one-to-many binding scenario
- Binding plasticity (chameleon behavior)
- Naive explanation for the chameleon behavior
- Intrinsic disorder commonness in PPIs networks
- Induced folding
- MoRF types
- Small-scale movements in MoRF partner
- Large-scale movements in MoRF partner
- Perturbations in MoRF partner: partial folding
- Perturbations in MoRF partner: partial unfolding
- Static complexes vs. dynamic complexes
- IDPs play staccato: “polyelectrostatic” model
- Interaction modes attainable by IDPs
- IDP interaction modes (1)
- IDP interaction modes (2)
- Intrinsic disorder and alternative splicing
- Alternative splicing (AS)
- Abundance of disorder in AS regions
- Functional regulation via AS
- Intrinsic disorder & post-translational modifications
- Phosphorylation and protein intrinsic disorder
- PKI alpha–cAMP-D PK complex
- PTM and protein intrinsic disorder
- Intrinsic disorder in the cell: controlled chaos
- Controlled chaos
- How nature handles IDPs binding promiscuity
- Functional misfolding of IDPs: concept
- Concluding remarks
- Acknowledgements (1)
- Acknowledgements (2)
Topics Covered
- Introducing the protein intrinsic disorder concept and intrinsically disordered proteins (IDPs)
- Structural peculiarities of IDPs
- Sequence peculiarities of IDPs
- Abundance of IDPs and their functions
- Intrinsic disorder in protein interaction networks
- Peculiarities of disorder-based binding and regulation
- Why are IDPs commonly involved in protein interactions?
Talk Citation
Uversky, V.N. (2013, August 20). The roles of intrinsic disorder in protein interaction networks [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved December 27, 2024, from https://doi.org/10.69645/BDRO2797.Export Citation (RIS)
Publication History
Financial Disclosures
- Prof. Vladimir N. Uversky has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.
A selection of talks on Biochemistry
Transcript
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0:00
Hello, my name is Vladimir Uversky.
I'm an associate professor in
the Department of Molecular Medicine in the University of South Florida.
I will talk today about the roles of intrinsic disorder in protein interaction networks.
0:16
Here is an outline of my talk.
First, I will introduce the intrinsically disordered proteins.
Then I will talk about their structural properties and some sequence features.
Then I will discuss the abundance and functions of the intrinsically disordered proteins.
Then I will talk about the role of
intrinsic disorder in protein-protein interaction networks,
and will try to answer the question of why these proteins are
commonly found in protein-protein interaction networks.
I will conclude with some remarks and an acknowledgment.
0:46
Before going into the detail of my talk, a brief introduction
to the protein intrinsic disorder concept is needed.
0:54
According to the classical structure-to-function paradigm,
all the information for a protein to be functional
is encoded in its unique three-dimensional structure, and
information about this structure is encoded in its unique amino acid sequence.
There are two general models which support this idea:
the 'lock-and-key' model, and the 'induced-fit' model.
1:17
The protein-structure function paradigm is a very useful idea which can be
considered as the 'Big Bang' that created the entire universe of modern protein science.
This slide shows that all branches of protein science originated from this idea.
1:35
The classical structure-to-function paradigm works for many proteins,
but not for every protein,
and quite a few exceptions to this rule were discovered over the years.