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Printable Handouts
Navigable Slide Index
- Introduction
- The human kinome
- PKA sequence
- PKA and Src define conserved subdomains
- cAMP is an ancient signaling molecule
- cAMP dependent protein kinase
- Outline
- PKI is a highly specific PKA inhibitor
- PKI structure
- Crystallized structure of PKI
- What do we learn from the sequence of PKI?
- Cross linked residues at active site
- N lobe
- Glycine-rich loop
- The catalytic machinery (1)
- The catalytic machinery (2)
- Prototype for catalysis
- Conserved active site residues
- Opening and closing of the active site cleft
- Close-up on active site
- Inhibitor peptide docks into active site (1)
- Inhibitor peptide docks into active site (2)
- The super family of kinases
- Correlating secondary structure and sequence
- Subdomains are conserved
- What can we learn from the structural kinome?
- Anatomy of a kinase
- Analysis of protein kinase core by LSP
- LSP
- The assembly of a hydrophobic spine
- Regulatory spine
- Second hydrophobic motif - catalytic spine
- The kinase hydrophobic core
- F-Helix as a scaffold
- Insulin receptor kinase
- PKB and Akt
- Kinase activation
- Why is this phosphate so important?
- Phosphorylation of Thr197
- Allostery and regulation by phosphorylation in EPK
- Importance of one phosphate
- Phosphorylation of activation segment
- Is phosphorylation of activation loop sufficient?
- Optimizing the N-lobe for catalysis (1)
- Protein kinase family members
- PKA catalytic subunit
- C-tail
- The C-tail of PKA
- Cis regulatory element
- Optimizing the N-lobe for catalysis (2)
- Optimizing the N-lobe for catalysis (3)
- Optimizing the N-lobe for catalysis (4)
- Priming of the C-lobe and the N-lobe for catalysis
- Future challenges
- Questions about inhibition and activation
- PKA architecture
- The surface of PKA
- The regulatory subunits (1)
- Extended complex interface
- Conformational dynamics of the regulatory subunit
- Conformational changes in RI-alpha
- A-Kinase Anchoring Proteins (AKAPs)
- Regulation and localization of PKA
- The regulatory subunits (2)
- Integration of signaling by PKA
- Docking domain of RI-alpha bound to DAKAP2
- PKA proteome
- PKA signaling
- Acknowledgements
Topics Covered
- Overview of protein kinase structure and function using PKA as a prototype for this enzyme superfamily
- What we have learned from the overall structural kinome
- Comparison of many protein kinases
- Eukaryotic protein kinase regulation
- Elucidation of general rules of architecture
- Illustration of how PKA is regulated by cAMP and how it is localized to specific macromolecular complexes through scaffold proteins
Talk Citation
Taylor, S. (2010, November 30). Protein kinase structure, function and regulation [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved November 23, 2024, from https://doi.org/10.69645/RKFX6286.Export Citation (RIS)
Publication History
Financial Disclosures
- Prof. Susan Taylor has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.
A selection of talks on Biochemistry
Transcript
Please wait while the transcript is being prepared...
0:00
My name is Susan Taylor.
I'm a professor of chemistry
and biochemistry and
also pharmacology at
the University of
California San Diego.
I'm also an investigator of
the Howard Hughes
Medical Institute.
I'd like to tell you
today about Protein,
Kinase, Structure,
Function and Regulation.
I'll talk about the entire
kinome which you see here,
as well as one specific member
of that protein
kinase superfamily.
0:28
If we look more closely
at the human kinome,
I'd like to give you a
little perspective on
the whole field of protein
phosphorylation and
historically how this
family evolved In
our science over the
last half century.
It's one of the
largest gene families.
Little less than two percent
of the human genome codes for
protein kinases.
They're probably
five or six splice
variants for each.
So it's a very
large gene family.
The protein phosphorylation
story began in
the late 1950s with
the work of Ed Krebs
and Eddie Fisher,
who discovered for
phosphorylase kinase and
its ability to phosphorylate
and regulate glycogen
phosphorylase.
That was the first
protein kinase to be
discovered PKA cyclic
cAMP-dependent
protein kinase was the second.
That was about a decade later,
also by Ed Krebs and Don Walsh.
Then a third important part of
this family only became
apparent after another decade.
This was the finding that Src,
which was an oncogene,
was a protein kinase
when it was cloned.
You could tell from
the sequence it was
related to this superfamily.
Then the finding by
Eckardt Sefton and
Tony Hunter that Src
phosphorylated not Syrian and
threatening, but
Tyrosine residues.
It meant that this was
a very large family
of proteins that
phosphorylated serine,
threonine, and tyrosine.
We're going to focus in
particular on one
branch of this kinome,
the AGC kinase is
protein kinase AGC and one
particular member PKA.