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Printable Handouts
Navigable Slide Index
- Introduction
- Talk outline
- Suggested reading / references
- Traditional heritability analysis
- Why are we interested in heritability?
- Types of phenotypes
- Definition of heritability
- Human height as an example of heritability
- Modes of inheritance
- Additive model
- Additive model: d=0
- Dominant model: d > 0
- Recessive model: d < 0
- Over-dominant model: d > a
- Additivity is the norm
- Some heritabilities
- Ways to measure heritability
- Example: Galton height data (available in R)
- Example: Galton height data
- Measuring relatedness
- Identity by descent (IBD)
- Example coefficients
- The covariance equation (1)
- The covariance equation (2)
- Statistical aside: covariance (1)
- Statistical aside: covariance (2)
- Estimating heritability; the covariance equation
- Parent-child studies: total phenotypic variation
- Parent-child studies: additive variance
- Parent-child studies: estimating heritability
- MZ twins
- MZ and DZ twins: The twin method / ACE model (1)
- MZ and DZ twins: The twin method / ACE model (2)
- Mixed model (1)
- Mixed model (2)
- Mixed model explained
- Instructions for using the mixed model
- Some caveats
- More caveats
- SNP-based heritability analysis
- Pedigree-based heritability estimation; problems
- Theoretical distribution of φ
- Theoretical distribution of φ: relationship table
- Theoretical distribution of φ: identical by decent
- Measuring actual relatedness
- Using actual relatedness for heritability estimation
- Using unrelated individuals
- Using unrelated individuals (advantages)
- Application to human height
- Instructions for estimating heritability for SNPs
- Liability model for binary traits
- The missing heritability problem (1)
- The missing heritability problem (2)
- The missing heritability problem (GWAS)
- SNP-based heritability analysis (height)
- SNP-based heritability analysis (other traits)
- Extensions of SNP-based heritability analysis
- Motivating allelic correlations (1)
- Motivating allelic correlations (2)
- Extensions of SNP-based heritability analysis (list)
- Genome partitioning (1)
- Genome partitioning (2)
- Gene-based association testing
- Bivariate analysis
- Bivariate analysis: example
- Summary
Topics Covered
- The concept of heritability
- How to measure heritability based on pedigree information
- How to measure heritability from genetic (SNP) data
- How SNP-based heritability analysis can be used to improve our understanding of complex traits.
Talk Citation
Speed, D. (2016, April 18). Heritability and its uses [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved November 21, 2024, from https://doi.org/10.69645/BZFA3710.Export Citation (RIS)
Publication History
Financial Disclosures
- Dr. Doug Speed has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.
Other Talks in the Series: Statistical Genetics
Transcript
Please wait while the transcript is being prepared...
0:00
My name is Doug Speed and I am
a researcher at University College London Genetics Institute,
and today I will be telling you about heritability and its uses and hopefully,
I'll convince you why this is the most exciting area in quantitative genetics.
0:15
So there are two parts to this talk.
First, I'll tell you about
traditional heritability analysis and then I'll talk to you a bit
about SNP-based heritability analysis which is
a very recent era in the last five years and hopefully,
I'll give you an idea of all the uses it has in trying to understand complex traits.
0:31
So first of all, here a few books and papers which I find very useful.
The first one is "Introduction to Quantitative Genetics" and this
has more details of a lot of the first part of this talk.
The second to "Introductory Statistics with R" and "Elements of Statistical Learning".
Both available with the author's webpages to view online and then
here major papers in the field of SNP-based heritability analysis.
So it'll be useful for later.
0:56
First, traditional heritability analysis.
1:01
So heritability is a fundamental concept in quantitative genetics.
Really if you plan to do a genetic analysis of a phenotype,
one of the first thing you should think about is what is
the heritability of a trait you wish to study.
If heritability is zero,
then there's no point doing a genetic analysis.
Because there are no genetic factors influencing the trait.
Whereas if the heritability is very high,
then this suggests your analysis is likely to be fruitful.
We're often interested in very broad comparisons.
So for example, heritability,
tells us how well we might predict a particular trait.
So this could be in plant and animal genetics or it could be in human diseases.
So for example, if there's two diseases and one has
heritability 20 percent and one has heritability 80 percent,
then in theory, we could predict the second disease better than the first.
So it's probably a good reason to try and study with the second trait.