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- Overview of Chaperone Networks
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1. Mapping the molecular chaperone interaction network in yeast
- Prof. Walid A. Houry
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2. The interaction network of the GroEL chaperonin
- Prof. Dr. F. Ulrich Hartl
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3. Human heat shock protein families
- Prof. Herman Kampinga
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4. Extracellular proteostasis: an emerging field
- Prof. Mark Wilson
- Proteasome Networks
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6. Biogenesis of the eukaryotic proteasome
- Prof. Mark Hochstrasser
- Understanding Intrinsically Disordered Proteins in Protein Homeostasis
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7. Intrinsically unstructured proteins: regulation and disease
- Dr. M. Madan Babu
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8. The roles of intrinsic disorder in protein interaction networks
- Prof. Vladimir N. Uversky
- Gene Regulatory Networks and their Role in Protein Homeostasis
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10. Structure, evolution and dynamics of gene regulatory networks
- Dr. M. Madan Babu
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12. Protein-protein interaction networks
- Prof. Peter Csermely
- Protein Homeostasis in the Endoplasmic Reticulum
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13. Role of calnexin and calreticulin in protein homeostasis within the endoplasmic reticulum
- Prof. David B. Williams
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14. The unfolded protein response
- Prof. Kazutoshi Mori
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15. Role of ER stress in cystic fibrosis airway inflammation
- Dr. Carla Maria Pedrosa Ribeiro
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16. The recognition of misfolded glycoproteins in the endoplasmic reticulum
- Dr. David Y. Thomas
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17. Chaperone systems of the endoplasmic reticulum
- Prof. Linda M. Hendershot
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18. The ERAD network
- Prof. Daniel Hebert
- Protein Homeostasis in the Mitochondria
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19. Protein homeostasis in mitochondria: AAA+ chaperones & proteases
- Dr. David A. Dougan
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21. Mitochondrial chaperonin Hsp60: locations, functions and pathology
- Prof. Francesco Cappello
- Prof. Alberto J. L. Macario
- Protein Homeostasis in the Nucleus
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22. Nuclear protein quality control degradation
- Dr. Richard G. Gardner
- Protein Homeostasis in Aging Disease
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23. Protein homeostasis during ageing: C. elegans as a model organism
- Prof. Nektarios Tavernarakis
- Protein Homeostasis in Neurodegeneration
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24. Endoplasmic reticulum stress in neurodegenerative diseases
- Prof. Claudio Soto
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25. Roles for Hsp40 molecular chaperones in protein misfolding disease
- Prof. Douglas M. Cyr
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26. Protein folding in vivo
- Prof. James Bardwell
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27. Protein degradation and defense against neurodegenerative disease 1
- Prof. Alfred Goldberg
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28. Protein degradation and defense against neurodegenerative disease 2
- Prof. Alfred Goldberg
Printable Handouts
Navigable Slide Index
- Introduction
- Complex networks are found throughout biology
- Defining the basic building blocks of networks?
- Database of transcription interactions in E. coli
- Algorithm that finds n-node network motifs
- The thirteen 3-node connected subgraphs
- The feedforward loop (1)
- 8 types of FFL regulation sign combinations
- Only two types of feed-forward loops are significant
- Dynamics of the feed-forward loop system
- FFL is a filter
- GFP reporter plasmid system for promoter activity
- Construct strains, reporting for a different promoter
- Each well reports for a different promoter
- FFL in vivo results
- Day-day reproducibility of better than 10%
- Response to brief pulses of X is filtered by FFL
- Arabinose system FFL
- Feedforward loop is a sign-sensitive filter
- Single input module (SIM)
- Single input module functions
- Flagella operons are activated in temporal order
- Arginin biosynthesis system
- 199 4-node directed connected subgraphs
- 4-node motifs in E. coli network
- Dense overlapping regulons (DOR)
- Mapping logic gates
- Drawing a complex network (1)
- Drawing a complex network (2)
- E. coli and yeast transcriptional networks
- Incoherent FFL is a pulse generator
- B. subtilis sporulation
- FFL drive temporal pattern of pulses
- Network motifs in human organ development
- Network motifs in growth factor signaling
- microRNAs in network motifs
- Looking for network motifs in other fields
- Foodwebs have "consensus motifs"
- Links between WWW pages
- Reverse engineering of electronic circuit
- Map of synaptic connections
- FFL in C. elegans avoidance reflex circuit
- Summary
- Acknowledgments
Topics Covered
- Complex networks are found throughout biology
- Can we define the basic building blocks of networks?
- Database of direct transcription interactions in E. coli
- Algorithm that finds n-node network motifs
- Feedforward loop (FFL)
- Dynamics of the feed-forward loop system
- The feed-forward loop is a filter for transient signals allowing fast shutdown
- GFP reporter plasmid system for promoter activity
- Response to brief pulses of X is filtered by FFL
- Sign-sensitive filtering by arabinose feed-forward loop
- Single input module (SIM)
- Dense overlapping regulons (DOR)
- Incoherent FFL is a pulse generator
- Network motifs in human organ development
- Network motifs in growth factor signalling
- High-accuracy promoter activity measurements in living cells
Talk Citation
Alon, U. (2012, February 2). Network motifs: basic building blocks of biological networks [Video file]. In The Biomedical & Life Sciences Collection, Henry Stewart Talks. Retrieved March 20, 2025, from https://doi.org/10.69645/HWRD4658.Export Citation (RIS)
Publication History
- Published on February 2, 2012
Financial Disclosures
- Prof. Uri Alon has not informed HSTalks of any commercial/financial relationship that it is appropriate to disclose.